Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CRC | rs13353861 | chr5:40863199 | C/A | 4.01E-5 | 373 | 22.37 | 21.37 | 26.1 | KM Plot |
| CRC | rs13353865 | chr5:40863284 | C/T | 4.01E-5 | 373 | 22.37 | 21.37 | 26.1 | KM Plot |
| CRC | rs13357343 | chr5:54677054 | C/T | 6.03E-5 | 373 | 22.32 | 23.43 | 9.67 | KM Plot |
| CRC | rs138578576 | chr22:50204808 | CA/C | 1.37E-8 | 373 | 22.25 | 25.83 | 7.9 | KM Plot |
| CRC | rs140037094 | chr15:81256719 | A/T | 1.4E-5 | 370 | 22.4 | 20.47 | 8.53 | KM Plot |
| CRC | rs141023326 | chr7:62012661 | C/T | 7.1E-7 | 359 | 22.75 | 20.05 | 11.27 | KM Plot |
| CRC | rs142641975 | chr6:53529842 | AAT/A | 2.75E-5 | 372 | 22.3 | 24.77 | 7.13 | KM Plot |
| CRC | rs143183462 | chr7:62009764 | G/A | 7.5E-7 | 363 | 22.83 | 20.23 | 11.27 | KM Plot |
| CRC | rs143738281 | chr7:62131053 | G/A | 5.04E-6 | 368 | 24.33 | 20.23 | 12.37 | KM Plot |
| CRC | rs144288226 | chr12:102027388 | C/T | 7.38E-9 | 368 | 22.13 | 26.33 | 5.1 | KM Plot |
| CRC | rs145956196 | chr6:53527882 | T/TA | 2.75E-5 | 372 | 22.3 | 24.77 | 7.13 | KM Plot |
| CRC | rs146749838 | chr12:102031135 | TTA/T | 6.93E-9 | 369 | 22.2 | 26.33 | 5.1 | KM Plot |
| CRC | rs147764742 | chr12:59951992 | A/AATAG | 8.82E-6 | 373 | 24.63 | 19.2 | 10.4 | KM Plot |
| CRC | rs149664543 | chr12:102029253 | GA/G | 7.38E-9 | 368 | 22.13 | 26.33 | 5.1 | KM Plot |
| CRC | rs149984258 | chr7:62068452 | C/T | 8.17E-7 | 366 | 23.6 | 20.23 | 11.27 | KM Plot |